PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52138.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 137aa    MW: 15082 Da    PI: 8.7377
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52138.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.9e-096688527
                  --SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                   C++f rtGtCk+Gd Ck+ H++
  MLOC_52138.2 66 VCNHFVRTGTCKFGDACKYFHPK 88
                  6********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.2E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.99E-15448No hitNo description
PfamPF062201.4E-9537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.236189IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-46388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-76589IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-76688IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-66686IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTAA ARRRHLQGAQ HHRARALWYD SVRRQESHGG APPLLQPDGA  60
ILGQGVCNHF VRTGTCKFGD ACKYFHPKPH AVNPALAPSG PFPGAMVQQS NFLGTQLNFI  120
GYQTVEGNSF SGDLFVA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703069e-60HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230700.12e-79PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP114e-58C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLM0WJL01e-100M0WJL0_HORVD; Uncharacterized protein
STRINGBRADI2G08905.15e-79(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-29C3H family protein